RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_01622 d.5.e.T.borreli 5S rRNA Unknown Gutell Lab CRW Site d.5.e.T.borreli 120 CRW_01623 d.5.e.T.cruzi 5S rRNA Unknown Gutell Lab CRW Site d.5.e.T.cruzi 120 CRW_01624 d.5.e.T.monococcum 5S rRNA Unknown Gutell Lab CRW Site d.5.e.T.monococcum 120 CRW_01625 d.5.e.T.thermophila.2 5S rRNA Tetrahymena thermophila Gutell Lab CRW Site d.5.e.T.thermophila.2 120 CRW_01626 d.5.e.U.unicinctus 5S rRNA Unknown Gutell Lab CRW Site d.5.e.U.unicinctus 120 PDB_00012 CIS-ACTING RNA REGULATORY ELEMENT (HIV-1 TAR), NMR, 20 STRUCTURES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1ANR 29 PDB_00013 IRON RESPONSIVE ELEMENT RNA HAIRPIN, NMR, 15 STRUCTURES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1AQO 29 PDB_00017 SOLUTION STRUCTURE OF THE HAIRPIN RIBOZYME LOOP B DOMAIN RNA, NMR, 10 STRUCTURES Hairp. Ribozyme Unknown RCSB Protein Data Bank 1B36 38 PDB_00023 GENTAMICIN C1A A-SITE COMPLEX Other RNA Unknown RCSB Protein Data Bank 1BYJ 27 PDB_00029 23S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 1C2W 2904

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)