RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_01128 d.16.e.A.plicata 16S rRNA Unknown Gutell Lab CRW Site d.16.e.A.plicata 1765 CRW_01129 d.16.e.A.scoticae 16S rRNA Unknown Gutell Lab CRW Site d.16.e.A.scoticae 1392 CRW_01133 d.16.e.Amblyospora.sp 16S rRNA Unknown Gutell Lab CRW Site d.16.e.Amblyospora.sp 1394 CRW_01134 d.16.e.B.algerae 16S rRNA Unknown Gutell Lab CRW Site d.16.e.B.algerae 1390 CRW_01140 d.16.e.B.gelatinosum 16S rRNA Unknown Gutell Lab CRW Site d.16.e.B.gelatinosum 1765 CRW_01142 d.16.e.B.hamifera 16S rRNA Unknown Gutell Lab CRW Site d.16.e.B.hamifera 1765 CRW_01144 d.16.e.B.investiens 16S rRNA Unknown Gutell Lab CRW Site d.16.e.B.investiens 1772 CRW_01145 d.16.e.B.macrosporum 16S rRNA Unknown Gutell Lab CRW Site d.16.e.B.macrosporum 1770 CRW_01147 d.16.e.B.mediterranea 16S rRNA Unknown Gutell Lab CRW Site d.16.e.B.mediterranea 1801 CRW_01153 d.16.e.B.moritziana 16S rRNA Unknown Gutell Lab CRW Site d.16.e.B.moritziana 1793

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)