RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00545 d.233.m.X.laevis 23S rRNA Unknown Gutell Lab CRW Site d.233.m.X.laevis 1640 CRW_00546 d.233.m.Z.mays 23S rRNA Unknown Gutell Lab CRW Site d.233.m.Z.mays 3514 CRW_00547 d.233.y.C.paradoxa 23S rRNA Unknown Gutell Lab CRW Site d.233.y.C.paradoxa 2926 CRW_00548 d.5.a.H.marismortui 5S rRNA Haloarcula marismortui Gutell Lab CRW Site d.5.a.H.marismortui 122 CRW_00549 d.5.b.A.globiformis.1 5S rRNA Unknown Gutell Lab CRW Site d.5.b.A.globiformis.1 123 CRW_00550 d.5.b.A.globiformis.2 5S rRNA Unknown Gutell Lab CRW Site d.5.b.A.globiformis.2 122 CRW_00551 d.5.b.A.oxydans 5S rRNA Unknown Gutell Lab CRW Site d.5.b.A.oxydans 122 CRW_00552 d.5.b.A.tumefaciens 5S rRNA Unknown Gutell Lab CRW Site d.5.b.A.tumefaciens 120 CRW_00553 d.5.b.B.subtilis 5S rRNA Bacillus subtilis Gutell Lab CRW Site d.5.b.B.subtilis 118 CRW_00554 d.5.b.D.acidovorans 5S rRNA Unknown Gutell Lab CRW Site d.5.b.D.acidovorans 117

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)