RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00515 d.233.b.S.aureus 23S rRNA Staphylococcus aureus Gutell Lab CRW Site d.233.b.S.aureus 2923 CRW_00516 d.233.b.S.carnosus 23S rRNA Unknown Gutell Lab CRW Site d.233.b.S.carnosus 2924 CRW_00517 d.233.b.T.maritima 23S rRNA Thermotoga maritima Gutell Lab CRW Site d.233.b.T.maritima 3023 CRW_00518 d.233.b.T.pallidum.A 23S rRNA Unknown Gutell Lab CRW Site d.233.b.T.pallidum.A 2953 CRW_00519 d.233.b.T.thermophilus 23S rRNA Thermus thermophilus Gutell Lab CRW Site d.233.b.T.thermophilus 2915 CRW_00520 d.233.c.C.reinhardtii 23S rRNA Unknown Gutell Lab CRW Site d.233.c.C.reinhardtii 2902 CRW_00521 d.233.c.E.gracilis 23S rRNA Unknown Gutell Lab CRW Site d.233.c.E.gracilis 2877 CRW_00522 d.233.c.P.falciparum 23S rRNA Unknown Gutell Lab CRW Site d.233.c.P.falciparum 2700 CRW_00523 d.233.c.Z.mays 23S rRNA Unknown Gutell Lab CRW Site d.233.c.Z.mays 2985 CRW_00524 d.233.e.A.thaliana 23S rRNA Unknown Gutell Lab CRW Site d.233.e.A.thaliana 3539

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)