RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00321 d.16.e.Babesia.sp.OKD 16S rRNA Unknown Gutell Lab CRW Site d.16.e.Babesia.sp.OKD 1720 CRW_00322 d.16.e.C.albicans 16S rRNA Unknown Gutell Lab CRW Site d.16.e.C.albicans 1787 CRW_00323 d.16.e.C.citrina 16S rRNA Unknown Gutell Lab CRW Site d.16.e.C.citrina 1772 CRW_00324 d.16.e.C.immitis 16S rRNA Unknown Gutell Lab CRW Site d.16.e.C.immitis 1799 CRW_00325 d.16.e.C.luteoviridis 16S rRNA Unknown Gutell Lab CRW Site d.16.e.C.luteoviridis 1802 CRW_00326 d.16.e.C.neoformans 16S rRNA Unknown Gutell Lab CRW Site d.16.e.C.neoformans 1805 CRW_00327 d.16.e.C.paradoxa 16S rRNA Unknown Gutell Lab CRW Site d.16.e.C.paradoxa 1807 CRW_00328 d.16.e.D.grandiflora 16S rRNA Unknown Gutell Lab CRW Site d.16.e.D.grandiflora 1809 CRW_00329 d.16.e.D.grandis 16S rRNA Unknown Gutell Lab CRW Site d.16.e.D.grandis 1798 CRW_00330 d.16.e.D.melanogaster 16S rRNA Unknown Gutell Lab CRW Site d.16.e.D.melanogaster 1995

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)