RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00291 d.16.c.S.pseudocostatum 16S rRNA Unknown Gutell Lab CRW Site d.16.c.S.pseudocostatum 1491 CRW_00292 d.16.c.T.gondii 16S rRNA Unknown Gutell Lab CRW Site d.16.c.T.gondii 1500 CRW_00293 d.16.c.Z.mays 16S rRNA Unknown Gutell Lab CRW Site d.16.c.Z.mays 1490 CRW_00294 d.16.e.A.castellanii 16S rRNA Unknown Gutell Lab CRW Site d.16.e.A.castellanii 2290 CRW_00295 d.16.e.A.corymbifera.1 16S rRNA Unknown Gutell Lab CRW Site d.16.e.A.corymbifera.1 1843 CRW_00296 d.16.e.A.corymbifera.2 16S rRNA Unknown Gutell Lab CRW Site d.16.e.A.corymbifera.2 1843 CRW_00297 d.16.e.A.flavus 16S rRNA Unknown Gutell Lab CRW Site d.16.e.A.flavus 1799 CRW_00298 d.16.e.A.fundyense 16S rRNA Unknown Gutell Lab CRW Site d.16.e.A.fundyense 1801 CRW_00299 d.16.e.A.invadans 16S rRNA Unknown Gutell Lab CRW Site d.16.e.A.invadans 1807 CRW_00300 d.16.e.A.leptoticha 16S rRNA Unknown Gutell Lab CRW Site d.16.e.A.leptoticha 1813

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)