RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00231 d.16.b.S.rimosus 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.rimosus 1530 CRW_00232 d.16.b.S.rutgersensis 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.rutgersensis 1527 CRW_00233 d.16.b.S.sampsonii 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.sampsonii 1531 CRW_00234 d.16.b.S.scabiei 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.scabiei 1530 CRW_00235 d.16.b.S.setonii 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.setonii 1532 CRW_00236 d.16.b.S.subrutilus 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.subrutilus 1524 CRW_00237 d.16.b.S.tendae 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.tendae 1530 CRW_00238 d.16.b.S.thermodiastaticus 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.thermodiastaticus 1528 CRW_00239 d.16.b.S.thermolineatus 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.thermolineatus 1526 CRW_00240 d.16.b.S.thermoviolaceus 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.thermoviolaceus 1528

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)