RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00100 d.16.b.C.vibrioforme 16S rRNA Unknown Gutell Lab CRW Site d.16.b.C.vibrioforme 1507 CRW_00101 d.16.b.Chlorogloeopsis.PCC7518 16S rRNA Unknown Gutell Lab CRW Site d.16.b.Chlorogloeopsis.PCC7518 1490 CRW_00103 d.16.b.D.desulfuricans 16S rRNA Unknown Gutell Lab CRW Site d.16.b.D.desulfuricans 1551 CRW_00104 d.16.b.D.nodosus 16S rRNA Unknown Gutell Lab CRW Site d.16.b.D.nodosus 1533 CRW_00105 d.16.b.D.radiodurans.1 16S rRNA Deinococcus radiodurans Gutell Lab CRW Site d.16.b.D.radiodurans.1 1504 CRW_00106 d.16.b.D.radiodurans.GEN 16S rRNA Deinococcus radiodurans Gutell Lab CRW Site d.16.b.D.radiodurans.GEN 1502 CRW_00107 d.16.b.D.thermophilus 16S rRNA Unknown Gutell Lab CRW Site d.16.b.D.thermophilus 1559 CRW_00108 d.16.b.E.brachy 16S rRNA Unknown Gutell Lab CRW Site d.16.b.E.brachy 1520 CRW_00109 d.16.b.E.coli.0157G.GEN 16S rRNA Unknown Gutell Lab CRW Site d.16.b.E.coli.0157G.GEN 1542 CRW_00110 d.16.b.E.coli 16S rRNA Escherichia coli Gutell Lab CRW Site d.16.b.E.coli 1542

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)