RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00407 RNase P RNA, Salt Marsh B-A5 RNase P RNA Unknown RNase P Database Salt Marsh B-A5 293 ASE_00408 RNase P RNA, Salt Marsh B-B1 RNase P RNA Unknown RNase P Database Salt Marsh B-B1 255 ASE_00409 RNase P RNA, Salt Marsh B-b3 RNase P RNA Unknown RNase P Database Salt Marsh B-b3 287 ASE_00410 RNase P RNA, Salt Marsh B-B2 RNase P RNA Unknown RNase P Database Salt Marsh B-B2 320 ASE_00411 RNase P RNA, Synechococcus sp., strain PCC 6717 RNase P RNA Unknown RNase P Database Synechococcus sp., strain PCC 6717 315 ASE_00412 RNase P RNA, Synechococcus sp., strain PCC 7001 RNase P RNA Unknown RNase P Database Synechococcus sp., strain PCC 7001 342 ASE_00413 RNase P RNA, Synechococcus sp., strain PCC 7003 RNase P RNA Unknown RNase P Database Synechococcus sp., strain PCC 7003 299 ASE_00414 RNase P RNA, Thermoplasma acidophilum, strain DSM 1728 RNase P RNA Unknown RNase P Database Thermoplasma acidophilum, strain DSM 1728 305 ASE_00415 RNase P RNA, Thermoleophilum album, strain NM RNase P RNA Unknown RNase P Database Thermoleophilum album, strain NM 332 ASE_00416 RNase P RNA, Thermus aquaticus, strain YT-1 RNase P RNA Thermus aquaticus RNase P Database Thermus aquaticus, strain YT-1 394

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)