RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00397 RNase P RNA, Salt Marsh A49(77) RNase P RNA Unknown RNase P Database Salt Marsh A49(77) 331 ASE_00398 RNase P RNA, Salt Marsh A51(79) RNase P RNA Unknown RNase P Database Salt Marsh A51(79) 335 ASE_00399 RNase P RNA, Salt Marsh A53(82) RNase P RNA Unknown RNase P Database Salt Marsh A53(82) 290 ASE_00400 RNase P RNA, Salt Marsh A55(84) RNase P RNA Unknown RNase P Database Salt Marsh A55(84) 341 ASE_00401 RNase P RNA, Salt Marsh A58(88) RNase P RNA Unknown RNase P Database Salt Marsh A58(88) 393 ASE_00402 RNase P RNA, Salt Marsh A60(90) RNase P RNA Unknown RNase P Database Salt Marsh A60(90) 292 ASE_00403 RNase P RNA, Salt Marsh A62(96) RNase P RNA Unknown RNase P Database Salt Marsh A62(96) 335 ASE_00404 RNase P RNA, uncharacterized N2 fixer SM1 RNase P RNA Unknown RNase P Database uncharacterized N2 fixer SM1 294 ASE_00405 RNase P RNA, uncharacterized N2 fixer SM2 RNase P RNA Unknown RNase P Database uncharacterized N2 fixer SM2 294 ASE_00406 RNase P RNA, Salt Marsh B-A3 RNase P RNA Unknown RNase P Database Salt Marsh B-A3 313

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)