RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00387 RNase P RNA, Salt Marsh A32(54) RNase P RNA Unknown RNase P Database Salt Marsh A32(54) 335 ASE_00388 RNase P RNA, Salt Marsh A33(55) RNase P RNA Unknown RNase P Database Salt Marsh A33(55) 303 ASE_00389 RNase P RNA, Salt Marsh A34(56) RNase P RNA Unknown RNase P Database Salt Marsh A34(56) 334 ASE_00390 RNase P RNA, Salt Marsh A36(59) RNase P RNA Unknown RNase P Database Salt Marsh A36(59) 291 ASE_00391 RNase P RNA, Salt Marsh A37(61) RNase P RNA Unknown RNase P Database Salt Marsh A37(61) 392 ASE_00392 RNase P RNA, Salt Marsh A38(62) RNase P RNA Unknown RNase P Database Salt Marsh A38(62) 290 ASE_00393 RNase P RNA, Salt Marsh A40(65) RNase P RNA Unknown RNase P Database Salt Marsh A40(65) 310 ASE_00394 RNase P RNA, Salt Marsh A46(74) RNase P RNA Unknown RNase P Database Salt Marsh A46(74) 307 ASE_00395 RNase P RNA, Salt Marsh A47(75) RNase P RNA Unknown RNase P Database Salt Marsh A47(75) 289 ASE_00396 RNase P RNA, Salt Marsh A48(76) RNase P RNA Unknown RNase P Database Salt Marsh A48(76) 289

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)