RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00579 Stre.scab._TRW-1883_1-402 tmRNA Unknown tmRNA Database Stre.scab._TRW-1883_1-402 402 TMR_00587 Sulf.azor._TRW-204536_1-351 tmRNA Unknown tmRNA Database Sulf.azor._TRW-204536_1-351 351 TMR_00588 Syne.elon._TRW-32046_1-394 tmRNA Unknown tmRNA Database Syne.elon._TRW-32046_1-394 394 TMR_00589 Syne.spec._AB003477_1-394 tmRNA Unknown tmRNA Database Syne.spec._AB003477_1-394 394 TMR_00600 Tann.fors._TRW-203275_1-400 tmRNA Unknown tmRNA Database Tann.fors._TRW-203275_1-400 400 TMR_00601 Thal.pseu._EF067921_1-344 tmRNA Unknown tmRNA Database Thal.pseu._EF067921_1-344 344 TMR_00602 Thal.pseu._TRW-296543_1-344 tmRNA Unknown tmRNA Database Thal.pseu._TRW-296543_1-344 344 TMR_00603 Thal.weis._AF049491_1-348 tmRNA Unknown tmRNA Database Thal.weis._AF049491_1-348 348 TMR_00604 Ther.comm._TRW-289377_1-355 tmRNA Unknown tmRNA Database Ther.comm._TRW-289377_1-355 355 TMR_00606 Ther.fusc._CP000088_1-372 tmRNA Unknown tmRNA Database Ther.fusc._CP000088_1-372 372

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)