RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00514 Salm.typh._AY316313_1-363 tmRNA Unknown tmRNA Database Salm.typh._AY316313_1-363 363 TMR_00515 Salm.typh._AY319520_1-363 tmRNA Unknown tmRNA Database Salm.typh._AY319520_1-363 363 TMR_00517 Serr.marc._TRW-273526_1-364 tmRNA Unknown tmRNA Database Serr.marc._TRW-273526_1-364 364 TMR_00518 Serr.marc._TRW-615_1-364 tmRNA Unknown tmRNA Database Serr.marc._TRW-615_1-364 364 TMR_00519 Shew.amaz._CP000507_1-356 tmRNA Unknown tmRNA Database Shew.amaz._CP000507_1-356 356 TMR_00520 Shew.balt._TRW-325240_1-356 tmRNA Unknown tmRNA Database Shew.balt._TRW-325240_1-356 356 TMR_00521 Shew.deni._CP000302_1-355 tmRNA Unknown tmRNA Database Shew.deni._CP000302_1-355 355 TMR_00522 Shew.frig._CP000447_1-356 tmRNA Unknown tmRNA Database Shew.frig._CP000447_1-356 356 TMR_00523 Shew.onei._AX048560_1-355 tmRNA Unknown tmRNA Database Shew.onei._AX048560_1-355 355 TMR_00524 Shew.putr._TRW-319224_1-356 tmRNA Unknown tmRNA Database Shew.putr._TRW-319224_1-356 356

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)