RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00232 Fran.tula._CP000439_1-421 tmRNA Unknown tmRNA Database Fran.tula._CP000439_1-421 421 TMR_00233 Frem.dipl._AY082653_1-389 tmRNA Unknown tmRNA Database Frem.dipl._AY082653_1-389 389 TMR_00238 Gemm.obsc._TRW-214688_1-412 tmRNA Unknown tmRNA Database Gemm.obsc._TRW-214688_1-412 412 TMR_00243 Gloe.viol._TRW-251221_1-462 tmRNA Unknown tmRNA Database Gloe.viol._TRW-251221_1-462 462 TMR_00244 Gluc.oxyd._CP000009_1-283 tmRNA Unknown tmRNA Database Gluc.oxyd._CP000009_1-283 283 TMR_00246 Grac.tenu._AY673996_1-396 tmRNA Unknown tmRNA Database Grac.tenu._AY673996_1-396 396 TMR_00247 Guil.thet._AF041468_1-327 tmRNA Unknown tmRNA Database Guil.thet._AF041468_1-327 327 TMR_00248 Guil.thet._TRW-55529_1-330 tmRNA Unknown tmRNA Database Guil.thet._TRW-55529_1-330 330 TMR_00249 Haem.ducr._AE017143_1-367 tmRNA Unknown tmRNA Database Haem.ducr._AE017143_1-367 367 TMR_00250 Haem.ducr._AX048594_1-365 tmRNA Unknown tmRNA Database Haem.ducr._AX048594_1-365 365

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)