RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00217 Esch.coli._CP000468_1-363 tmRNA Unknown tmRNA Database Esch.coli._CP000468_1-363 363 TMR_00218 Esch.coli._D12501_1-363 tmRNA Unknown tmRNA Database Esch.coli._D12501_1-363 363 TMR_00219 Esch.coli._D90888_1-363 tmRNA Unknown tmRNA Database Esch.coli._D90888_1-363 363 TMR_00220 Esch.coli._TRW-331111_1-363 tmRNA Unknown tmRNA Database Esch.coli._TRW-331111_1-363 363 TMR_00221 Esch.coli._U00096_1-363 tmRNA Unknown tmRNA Database Esch.coli._U00096_1-363 363 TMR_00222 Esch.coli._U36840_1-363 tmRNA Unknown tmRNA Database Esch.coli._U36840_1-363 363 TMR_00224 Fibr.succ._TRW-59374_1-361 tmRNA Unknown tmRNA Database Fibr.succ._TRW-59374_1-361 361 TMR_00225 Frag.pinn._AF550351_1-335 tmRNA Unknown tmRNA Database Frag.pinn._AF550351_1-335 335 TMR_00226 Fran.spec._CP000249_1-374 tmRNA Unknown tmRNA Database Fran.spec._CP000249_1-374 374 TMR_00227 Fran.spec._TRW-298653_1-375 tmRNA Unknown tmRNA Database Fran.spec._TRW-298653_1-375 375

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)