RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00174 Emil.huxl._TRW-280463_1-291 tmRNA Unknown tmRNA Database Emil.huxl._TRW-280463_1-291 291 TMR_00175 Ente.aero._AY491435_1-363 tmRNA Unknown tmRNA Database Ente.aero._AY491435_1-363 363 TMR_00176 Ente.cloa._AY491434_1-364 tmRNA Unknown tmRNA Database Ente.cloa._AY491434_1-364 364 TMR_00181 Ente.saka._TRW-28141_1-364 tmRNA Unknown tmRNA Database Ente.saka._TRW-28141_1-364 364 TMR_00182 envi.sequ._TRW-2-1_1-365 tmRNA Unknown tmRNA Database envi.sequ._TRW-2-1_1-365 365 TMR_00183 envi.sequ._TRW-2-2_1-356 tmRNA Unknown tmRNA Database envi.sequ._TRW-2-2_1-356 356 TMR_00184 envi.sequ._TRW-204433_1-356 tmRNA Unknown tmRNA Database envi.sequ._TRW-204433_1-356 356 TMR_00185 envi.sequ._TRW-204441-1_1-274 tmRNA Unknown tmRNA Database envi.sequ._TRW-204441-1_1-274 274 TMR_00186 envi.sequ._TRW-204441-2_1-284 tmRNA Unknown tmRNA Database envi.sequ._TRW-204441-2_1-284 284 TMR_00188 envi.sequ._TRW-204455-2_1-314 tmRNA Unknown tmRNA Database envi.sequ._TRW-204455-2_1-314 314

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)