RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00074 Brad.japo._BA000040_1-315 tmRNA Unknown tmRNA Database Brad.japo._BA000040_1-315 315 TMR_00075 Brad.japo._M73823_1-315 tmRNA Unknown tmRNA Database Brad.japo._M73823_1-315 315 TMR_00076 Brev.line._TRW-321955_1-377 tmRNA Unknown tmRNA Database Brev.line._TRW-321955_1-377 377 TMR_00077 Bruc.abor._AE017223_1-320 tmRNA Unknown tmRNA Database Bruc.abor._AE017223_1-320 320 TMR_00078 Bruc.meli._AE009503_1-320 tmRNA Unknown tmRNA Database Bruc.meli._AE009503_1-320 320 TMR_00079 Bruc.suis._AE014291_1-320 tmRNA Unknown tmRNA Database Bruc.suis._AE014291_1-320 320 TMR_00080 Buch.aphi._AE013218_1-376 tmRNA Unknown tmRNA Database Buch.aphi._AE013218_1-376 376 TMR_00081 Buch.aphi._AE016826_1-367 tmRNA Unknown tmRNA Database Buch.aphi._AE016826_1-367 367 TMR_00092 Cald.sacc._TRW-351627_1-368 tmRNA Unknown tmRNA Database Cald.sacc._TRW-351627_1-368 368 TMR_00102 Camp.upsa._TRW-306264_1-359 tmRNA Unknown tmRNA Database Camp.upsa._TRW-306264_1-359 359

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)