RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00049 Baci.lich._CP000002_1-356 tmRNA Unknown tmRNA Database Baci.lich._CP000002_1-356 356 TMR_00051 Baci.subt._TRW-1423_1-363 tmRNA Unknown tmRNA Database Baci.subt._TRW-1423_1-363 363 TMR_00052 Baci.subt._Z99121_1-360 tmRNA Unknown tmRNA Database Baci.subt._Z99121_1-360 360 TMR_00055 Bact.frag._CR626927_1-398 tmRNA Unknown tmRNA Database Bact.frag._CR626927_1-398 398 TMR_00056 Bact.frag._TRW-817_1-398 tmRNA Unknown tmRNA Database Bact.frag._TRW-817_1-398 398 TMR_00057 Bact.mari._TRW-97084_1-385 tmRNA Unknown tmRNA Database Bact.mari._TRW-97084_1-385 385 TMR_00058 Bact.thet._AE015928_1-397 tmRNA Unknown tmRNA Database Bact.thet._AE015928_1-397 397 TMR_00059 Bart.hens._TRW-283166_1-313 tmRNA Unknown tmRNA Database Bart.hens._TRW-283166_1-313 313 TMR_00060 Bart.quin._TRW-283165_1-313 tmRNA Unknown tmRNA Database Bart.quin._TRW-283165_1-313 313 TMR_00061 Bdel.bact._BX842656_1-346 tmRNA Unknown tmRNA Database Bdel.bact._BX842656_1-346 346

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)