RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SRP_00189 LYC.ES-M SRP RNA Unknown SRP Database LYC.ES-M 274 SRP_00190 LYC.ES-N SRP RNA Unknown SRP Database LYC.ES-N 302 SRP_00191 LYC.ES-O SRP RNA Unknown SRP Database LYC.ES-O 303 SRP_00192 MAC.MUL. SRP RNA Unknown SRP Database MAC.MUL. 302 SRP_00193 MAN.SUC. SRP RNA Unknown SRP Database MAN.SUC. 118 SRP_00194 MES.FLO. SRP RNA Unknown SRP Database MES.FLO. 81 SRP_00195 MES.LOT. SRP RNA Unknown SRP Database MES.LOT. 103 SRP_00196 MES.VIR.CL. SRP RNA Unknown SRP Database MES.VIR.CL. 97 SRP_00197 MET.ACE. SRP RNA Unknown SRP Database MET.ACE. 315 SRP_00198 MET.BAR. SRP RNA Unknown SRP Database MET.BAR. 320

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)