RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SRP_00095 COR.EFF. SRP RNA Unknown SRP Database COR.EFF. 90 SRP_00096 COR.GLU. SRP RNA Unknown SRP Database COR.GLU. 89 SRP_00098 COX.BUR. SRP RNA Unknown SRP Database COX.BUR. 114 SRP_00099 CRY.HOM. SRP RNA Unknown SRP Database CRY.HOM. 300 SRP_00100 CRY.PAR. SRP RNA Unknown SRP Database CRY.PAR. 300 SRP_00102 DAN.RER. SRP RNA Unknown SRP Database DAN.RER. 299 SRP_00103 DAS.NOV. SRP RNA Unknown SRP Database DAS.NOV. 302 SRP_00104 DEB.HAN. SRP RNA Unknown SRP Database DEB.HAN. 263 SRP_00105 DEI.RAD. SRP RNA Deinococcus radiodurans SRP Database DEI.RAD. 106 SRP_00106 DES.PSY. SRP RNA Unknown SRP Database DES.PSY. 103

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)