RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SRP_00054 BRU.MEL. SRP RNA Unknown SRP Database BRU.MEL. 106 SRP_00055 BRU.SUI. SRP RNA Unknown SRP Database BRU.SUI. 106 SRP_00056 BUC.APH. SRP RNA Unknown SRP Database BUC.APH. 114 SRP_00057 BUC.SPE. SRP RNA Unknown SRP Database BUC.SPE. 113 SRP_00058 BUR.MAL. SRP RNA Unknown SRP Database BUR.MAL. 108 SRP_00059 BUR.PSE. SRP RNA Unknown SRP Database BUR.PSE. 108 SRP_00060 CAE.BRI. SRP RNA Unknown SRP Database CAE.BRI. 299 SRP_00061 CAE.EL-A SRP RNA Unknown SRP Database CAE.EL-A 300 SRP_00062 CAE.EL-B SRP RNA Unknown SRP Database CAE.EL-B 299 SRP_00063 CAE.EL-C SRP RNA Unknown SRP Database CAE.EL-C 299

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)