RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00822 Bicoid 3 prime-UTR regulatory element, RF00551, AF466626.1/3213-3763 Other RNA Unknown Rfam Database RF00551 AF466626.1/3763-3213 551 RFA_00823 Bicoid 3 prime-UTR regulatory element, RF00551, AF466630.1/3213-3763 Other RNA Unknown Rfam Database RF00551 AF466630.1/3763-3213 551 RFA_00824 Bicoid 3 prime-UTR regulatory element, RF00551, AF466631.1/3213-3763 Other RNA Unknown Rfam Database RF00551 AF466631.1/3763-3213 551 RFA_00825 Bicoid 3 prime-UTR regulatory element, RF00551, AF466636.1/3213-3763 Other RNA Unknown Rfam Database RF00551 AF466636.1/3763-3213 551 RFA_00826 Bicoid 3 prime-UTR regulatory element, RF00551, AF466639.1/3212-3762 Other RNA Unknown Rfam Database RF00551 AF466639.1/3762-3212 551 RFA_00827 Bicoid 3 prime-UTR regulatory element, RF00551, M32121.1/250-792 Other RNA Unknown Rfam Database RF00551 M32121.1/792-250 543 RFA_00828 Bicoid 3 prime-UTR regulatory element, RF00551, M32123.1/262-812 Other RNA Unknown Rfam Database RF00551 M32123.1/812-262 551 RFA_00829 Bicoid 3 prime-UTR regulatory element, RF00551, M32124.1/262-812 Other RNA Unknown Rfam Database RF00551 M32124.1/812-262 551 RFA_00830 Bicoid 3 prime-UTR regulatory element, RF00551, M32125.1/227-779 Other RNA Unknown Rfam Database RF00551 M32125.1/779-227 553 RFA_00831 Bicoid 3 prime-UTR regulatory element, RF00551, M32126.1/307-857 Other RNA Unknown Rfam Database RF00551 M32126.1/857-307 551

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)