RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00812 R2 RNA element, RF00524, U13033.1/1423-1658 Other RNA Unknown Rfam Database RF00524 U13033.1/1658-1423 236 RFA_00813 R2 RNA element, RF00524, U13034.1/1423-1648 Other RNA Unknown Rfam Database RF00524 U13034.1/1648-1423 226 RFA_00814 R2 RNA element, RF00524, U13035.1/1423-1647 Other RNA Unknown Rfam Database RF00524 U13035.1/1647-1423 225 RFA_00815 R2 RNA element, RF00524, U81811.1/530-751 Other RNA Unknown Rfam Database RF00524 U81811.1/751-530 222 RFA_00816 R2 RNA element, RF00524, U81814.1/504-719 Other RNA Unknown Rfam Database RF00524 U81814.1/719-504 216 RFA_00817 R2 RNA element, RF00524, U81815.1/525-734 Other RNA Unknown Rfam Database RF00524 U81815.1/734-525 210 RFA_00818 R2 RNA element, RF00524, U81985.1/508-709 Other RNA Unknown Rfam Database RF00524 U81985.1/709-508 202 RFA_00819 R2 RNA element, RF00524, X51967.1/3349-3585 Other RNA Unknown Rfam Database RF00524 X51967.1/3585-3349 237 RFA_00820 Bicoid 3 prime-UTR regulatory element, RF00551, AC002512.1/12119-11569 Other RNA Unknown Rfam Database RF00551 AC002512.1/11569-12119 551 RFA_00821 Bicoid 3 prime-UTR regulatory element, RF00551, AF465792.1/2973-3522 Other RNA Unknown Rfam Database RF00551 AF465792.1/3522-2973 550

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)