RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00746 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AY188187.1/197-239 Other RNA Unknown Rfam Database RF00164 AY188187.1/239-197 43 RFA_00747 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AY188190.1/197-239 Other RNA Unknown Rfam Database RF00164 AY188190.1/239-197 43 RFA_00748 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AY188191.1/197-239 Other RNA Unknown Rfam Database RF00164 AY188191.1/239-197 43 RFA_00749 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AY188195.1/190-232 Other RNA Unknown Rfam Database RF00164 AY188195.1/232-190 43 RFA_00750 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AY188199.1/190-232 Other RNA Unknown Rfam Database RF00164 AY188199.1/232-190 43 RFA_00751 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AY304452.1/197-239 Other RNA Unknown Rfam Database RF00164 AY304452.1/239-197 43 RFA_00752 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AY304457.1/197-239 Other RNA Unknown Rfam Database RF00164 AY304457.1/239-197 43 RFA_00753 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AY304462.1/197-239 Other RNA Unknown Rfam Database RF00164 AY304462.1/239-197 43 RFA_00754 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AY304470.1/197-239 Other RNA Unknown Rfam Database RF00164 AY304470.1/239-197 43 RFA_00755 Coronavirus 3 prime stem-loop II-like motif (s2m), RF00164, AY338174.1/29515-29557 Other RNA Unknown Rfam Database RF00164 AY338174.1/29557-29515 43

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)