RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00746 THE STRUCTURE OF A RIBOSOMAL PROTEIN L1-MRNA COMPLEX Other rRNA METHANOCOCCUS JANNASCHII RCSB Protein Data Bank 1U63 98 PDB_00747 CRYSTAL STRUCTURE OF A SELF-SPLICING GROUP I INTRON WITH BOTH EXONS GI Intron HOMO SAPIENS RCSB Protein Data Bank 1U6B 222 PDB_00748 NMR STRUCTURE OF THE MLV ENCAPSIDATION SIGNAL BOUND TO THE NUCLEOCAPSID PROTEIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1U6P 101 PDB_00750 CRYSTAL STRUCTURE OF THE SPECIFICITY DOMAIN OF RIBONUCLEASE P OF THE A-TYPE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1U9S 155 PDB_00751 RNA APTAMER COMPLEXED WITH HIV-1 REV PEPTIDE, NMR, 7 STRUCTURES Synthetic RNA HUMAN IMMUNODEFICIENCY VIRUS 1 RCSB Protein Data Bank 1ULL 35 PDB_00752 THE CRYSTAL STRUCTURE OF A ZINC FINGER- RNA COMPLEX REVEALS TWO MODES OF MOLECULAR RECOGNITION 5S rRNA XENOPUS LAEVIS RCSB Protein Data Bank 1UN6 122 PDB_00755 DESIGNED HIV-1 TAR BINDING LIGAND Other RNA Unknown RCSB Protein Data Bank 1UTS 29 PDB_00756 NMR STRUCTURE OF A SYNTHETIC SMALL MOLECULE, RBT203, BOUND TO HIV-1 TAR RNA Other RNA Unknown RCSB Protein Data Bank 1UUD 29 PDB_00757 NMR STRUCTURE OF A SYNTHETIC SMALL MOLECULE, RBT158, BOUND TO HIV-1 TAR RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1UUI 29 PDB_00769 CRYSTAL STRUCTURE OF FIVE 70S RIBOSOMES FROM ESCHERICHIA COLI IN COMPLEX WITH PROTEIN Y. THIS FILE C 16S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 1VOQ 1526

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)