RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00675 STRUCTURE OF A DEACYLATED TRNA MINIHELIX BOUND TO THE E SITE OF THE LARGE RIBOSOMAL SUBUNIT OF HALOA 23S rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 1QVF 2888 PDB_00676 STRUCTURE OF CCA OLIGONUCLEOTIDE BOUND TO THE TRNA BINDING SITES OF THE LARGE RIBOSOMAL SUBUNIT OF H 23S rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 1QVG 2885 PDB_00681 CRYSTAL STRUCTURE OF TRNA PSEUDOURIDINE SYNTHASE TRUB AND ITS RNA COMPLEX: RNA-PROTEIN RECOGNITION T tRNA THERMOTOGA MARITIMA RCSB Protein Data Bank 1R3E 51 PDB_00685 NMR STRUCTURE OF THE R(GGAGGACAUUCCUCACGGGUGACCGUGGUCCUCC), DOMAIN IV STEM-LOOP B OF ENTEROVIRAL IRE Viral & Phage Unknown RCSB Protein Data Bank 1R7Z 34 PDB_00687 ATP BINDING RNA APTAMER IN COMPLEX WITH AMP, NMR, 10 STRUCTURES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1RAW 36 PDB_00692 MOLECULAR BASIS OF BOX C/D RNA-PROTEIN INTERACTION: CO- CRYSTAL STRUCTURE OF THE ARCHAEAL SRNP INTIA Other rRNA ARCHAEOGLOBUS FULGIDUS RCSB Protein Data Bank 1RLG 50 PDB_00701 STRUCTURE OF THE SIGNAL RECOGNITION PARTICLE INTERACTING WITH THE ELONGATION-ARRESTED RIBOSOME Synthetic RNA TURSIOPS TRUNCATUS RCSB Protein Data Bank 1RY1 302 PDB_00702 THE STRUCTURE OF A RIBOSOMAL PROTEIN S8/SPC OPERON MRNA COMPLEX Other rRNA ESCHERICHIA COLI RCSB Protein Data Bank 1S03 94 PDB_00703 STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FO 16S rRNA SACCHAROMYCES CEREVISIAE RCSB Protein Data Bank 1S1H 1466 PDB_00704 STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FO 23S rRNA SACCHAROMYCES CEREVISIAE RCSB Protein Data Bank 1S1I 2916

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)