RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00606 a.I1.b.coliphage.T4.A2.NRDD GI Intron Unknown Gutell Lab CRW Site a.I1.b.coliphage.T4.A2.NRDD 1058 CRW_00608 a.I1.b.Dermocarpa.sp.ATCC29371.C3.tMET GI Intron Unknown Gutell Lab CRW Site a.I1.b.Dermocarpa.sp.ATCC29371.C3.tMET 268 CRW_00609 a.I1.b.P.hollandica.1.C3.trnL GI Intron Unknown Gutell Lab CRW Site a.I1.b.P.hollandica.1.C3.trnL 373 CRW_00610 a.I1.b.Phormidium.sp.N182.C3.tLEU GI Intron Unknown Gutell Lab CRW Site a.I1.b.Phormidium.sp.N182.C3.tLEU 270 CRW_00611 a.I1.b.S.hofmanii.C3.tMET GI Intron Unknown Gutell Lab CRW Site a.I1.b.S.hofmanii.C3.tMET 251 CRW_00612 a.I1.b.S.negevensis.B4.LSU.1931 GI Intron Unknown Gutell Lab CRW Site a.I1.b.S.negevensis.B4.LSU.1931 736 CRW_00613 a.I1.b.Synechococcus.sp2.C3.tLEU GI Intron Unknown Gutell Lab CRW Site a.I1.b.Synechococcus.sp2.C3.tLEU 265 CRW_00616 a.I1.c.C.moewusii.B4.PSBA.i2 GI Intron Unknown Gutell Lab CRW Site a.I1.c.C.moewusii.B4.PSBA.i2 1844 CRW_00617 a.I1.c.C.pallidostigmatica.B4.LSU.1931 GI Intron Unknown Gutell Lab CRW Site a.I1.c.C.pallidostigmatica.B4.LSU.1931 924 CRW_00618 a.I1.c.G.prostrata.C3.tLEU GI Intron Unknown Gutell Lab CRW Site a.I1.c.G.prostrata.C3.tLEU 336

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)